PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001521-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family M-type_MADS
Protein Properties Length: 255aa    MW: 29170.3 Da    PI: 8.771
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001521-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.46.6e-171150342
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        i n+s r+ tf kR++g+lKK +ELS+LC+++ + ii+s+
  WALNUT_00001521-RA 11 IANDSARKATFKKRKKGLLKKMSELSTLCAIQTCAIIYSP 50
                        89*************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-21160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.47149IPR002100Transcription factor, MADS-box
CDDcd002668.41E-22285No hitNo description
SuperFamilySSF554551.57E-23295IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MTRKKVNLAY IANDSARKAT FKKRKKGLLK KMSELSTLCA IQTCAIIYSP YDPEPEVWPS  60
PLGAQSVIAR FKSMPEMEQS KKMVNQESFL MQRITKAEDQ LKKQQRESRE LEMTQVMYKS  120
LVGNQGLQNL GVVDLNDLGW LIEKTVEEIG ERIKSLREQI MPPPQVVTAG HINRTSQEIY  180
GENQQLSKEF KPNDHQNAGF GLRNEGKTAS HDDENPQWLM EMLRSNESVG RNEGCMLPYA  240
LNNNNNSLWS TFNFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVNLAYIANDSARKATFKKRK
22125KKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376202.18e-80PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK38e-62AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLU5GF695e-79U5GF69_POPTR; Uncharacterized protein
STRINGPOPTR_0005s00420.16e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-58AGAMOUS-like 80